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LOC116435291 RNA binding motif protein 12B-like [ Xenopus laevis (African clawed frog) ]

Gene ID: 116435291, updated on 12-May-2024

Summary

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Gene symbol
LOC116435291
Gene description
RNA binding motif protein 12B-like
Locus tag
XELAEV_18032193mg
See related
EnsemblRapid:ENSXLAG00005032219
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See LOC116435291 in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (137640338..137652811)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 12B-A-like Neighboring gene RNA binding motif protein 12B gene 1 L homeolog Neighboring gene RNA-binding protein 12B Neighboring gene pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1 L homeolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054381.1 Chromosome 6L Reference Xenopus_laevis_v10.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RNA binding motif protein 12B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001377473.1 → NP_001364402.1  RNA binding motif protein 12B-like

    Status: VALIDATED

    Source sequence(s)
    JAGEVR010000049
    UniProtKB/TrEMBL
    A0A8J0QG11
    Conserved Domains (4) summary
    COG0724
    Location:112 → 316
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:318 → 398
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:30 → 108
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:432 → 507
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    137640338..137652811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565226.1 → XP_041421160.1  RNA binding motif protein 12B-like isoform X2

    UniProtKB/TrEMBL
    A0A1L8FZH5, A0A974CP25
    Related
    ENSXLAP00005096614.1, ENSXLAT00005098392.1
    Conserved Domains (4) summary
    COG0724
    Location:84 → 288
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:290 → 370
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:404 → 479
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_041565225.1 → XP_041421159.1  RNA binding motif protein 12B-like isoform X1

    UniProtKB/TrEMBL
    A0A8J1KY19
    Conserved Domains (3) summary
    smart00360
    Location:619 → 686
    RRM; RNA recognition motif
    COG0724
    Location:280 → 462
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:36 → 123
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version

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