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slc1a1 solute carrier family 1 member 1 [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116707457, updated on 18-Mar-2024

Summary

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Gene symbol
slc1a1
Gene description
solute carrier family 1 member 1
Locus tag
FQN60_006245
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See slc1a1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 19 NC_045751.1 (6556613..6588035)

Chromosome 19 - NC_045751.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 5a Neighboring gene RAP1, GTP-GDP dissociation stimulator 1 Neighboring gene uncharacterized LOC116707139 Neighboring gene spermatogenesis associated 6-like Neighboring gene zinc finger protein 239-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045751.1 Chromosome 19 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045751.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    6556613..6588035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032544796.1 → XP_032400687.1  excitatory amino acid transporter 3

    Conserved Domains (1) summary
    pfam00375
    Location:21 → 465
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein
Heading Accession and Version

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