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LOC117476084 peroxisomal membrane protein 2-like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117476084, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117476084
Gene description
peroxisomal membrane protein 2-like
See related
EnsemblRapid:ENSTBNG00005002726
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
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Genomic context

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See LOC117476084 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022988176.1 (262172..263784)

NW_022988176.1Genomic Context describing neighboring genes Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial-like Neighboring gene peroxisomal membrane protein 2-like Neighboring gene polyubiquitin-like Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial-like Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial-like Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022988176 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal membrane protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022988176.1 Reference fTreBer1.1

    Range
    262172..263784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034122457.1 → XP_033978348.1  peroxisomal membrane protein 2-like

    Related
    ENSTBNP00005004767.1, ENSTBNT00005005008.1
    Conserved Domains (1) summary
    pfam04117
    Location:94 → 155
    Mpv17_PMP22; Mpv17 / PMP22 family
Nucleotide Protein
Heading Accession and Version

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