U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117595538 synaptobrevin-1-like [ Esox lucius (northern pike) ]

Gene ID: 117595538, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117595538
Gene description
synaptobrevin-1-like
See related
Ensembl:ENSELUG00000044532
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117595538 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 14 NC_047582.1 (22856389..22858790, complement)

Chromosome 14 - NC_047582.1Genomic Context describing neighboring genes Neighboring gene MARVEL domain containing 2a Neighboring gene StAR related lipid transfer domain containing 4 Neighboring gene uncharacterized wu:fi75a02 Neighboring gene phosphatidylserine decarboxylase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047582.1 Chromosome 14 Reference fEsoLuc1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptobrevin-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047582.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    22856389..22858790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034296803.1 → XP_034152694.1  synaptobrevin-1-like

    UniProtKB/TrEMBL
    A0A3P8XQH8
    Related
    ENSELUP00000092425.1, ENSELUT00000092419.1
    Conserved Domains (1) summary
    cl22856
    Location:2 → 58
    SNARE; SNARE motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases