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LOC118033208 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like [ Populus alba (white poplar) ]

Gene ID: 118033208, updated on 14-Dec-2024

Summary

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Gene symbol
LOC118033208
Gene description
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like
Locus tag
D5086_0000207370
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus alba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC118033208 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023272008.1 (17263..21516)

NW_023272008.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein 23 Neighboring gene heat shock 70 kDa protein 17-like Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023272008 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM523922v1 Primary Assembly

Genomic

  1. NW_023272008.1 Reference ASM523922v1 Primary Assembly

    Range
    17263..21516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035038103.1 → XP_034893994.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X1

    UniProtKB/TrEMBL
    A0A4U5PLV9
    Conserved Domains (1) summary
    cl19932
    Location:94 → 178
    OTU; OTU-like cysteine protease

  2. XM_035038104.1 → XP_034893995.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X2

    UniProtKB/TrEMBL
    A0A4U5PLV9
    Conserved Domains (1) summary
    cl19932
    Location:94 → 178
    OTU; OTU-like cysteine protease

  3. XM_035038106.1 → XP_034893997.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X3

    Conserved Domains (1) summary
    cl19932
    Location:94 → 164
    OTU; OTU-like cysteine protease

  4. XM_035038105.1 → XP_034893996.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X3

    Conserved Domains (1) summary
    cl19932
    Location:94 → 164
    OTU; OTU-like cysteine protease

  5. XM_035038107.1 → XP_034893998.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X1

    UniProtKB/TrEMBL
    A0A4U5PLV9
    Conserved Domains (1) summary
    cl19932
    Location:94 → 178
    OTU; OTU-like cysteine protease
Nucleotide Protein
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