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LOC118063586 50S ribosomal protein L13, chloroplastic-like [ Populus alba (white poplar) ]

Gene ID: 118063586, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118063586
Gene description
50S ribosomal protein L13, chloroplastic-like
Locus tag
D5086_0000168120
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus alba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC118063586 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023271845.1 (1223565..1227898)

NW_023271845.1Genomic Context describing neighboring genes Neighboring gene protein ROOT INITIATION DEFECTIVE 3-like Neighboring gene protein VTE6, chloroplastic-like Neighboring gene probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g53440

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023271845 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
50S ribosomal protein L13, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM523922v1 Primary Assembly

Genomic

  1. NW_023271845.1 Reference ASM523922v1 Primary Assembly

    Range
    1223565..1227898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035077660.1 → XP_034933551.1  50S ribosomal protein L13, chloroplastic-like

    Conserved Domains (1) summary
    PRK09216
    Location:96 → 242
    rplM; 50S ribosomal protein L13; Reviewed

RNA

  1. XR_004689930.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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