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ccnt1 cyclin T1 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118324396, updated on 20-Mar-2024

Summary

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Gene symbol
ccnt1
Gene description
cyclin T1
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See ccnt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339707.1 (25055160..25059738)

NW_023339707.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118324171 Neighboring gene uncharacterized LOC118324974 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene NCK-associated protein 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339707 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription, elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin/CDK positive transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-T1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339707.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    25055160..25059738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035656717.1 → XP_035512610.1  cyclin-T1 isoform X1

    Conserved Domains (2) summary
    cd20595
    Location:14 → 151
    CYCLIN_CCNT1_rpt1; first cyclin box found in cyclin-T1 (CCNT1)
    cd20597
    Location:155 → 266
    CYCLIN_CCNT1_rpt2; second cyclin box found in cyclin-T1 (CCNT1)

  2. XM_035656718.1 → XP_035512611.1  cyclin-T1 isoform X2

    Conserved Domains (2) summary
    cd20595
    Location:14 → 151
    CYCLIN_CCNT1_rpt1; first cyclin box found in cyclin-T1 (CCNT1)
    cd20597
    Location:155 → 263
    CYCLIN_CCNT1_rpt2; second cyclin box found in cyclin-T1 (CCNT1)
Nucleotide Protein
Heading Accession and Version

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