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Cntn6 contactin 6 [ Onychomys torridus (southern grasshopper mouse) ]

Gene ID: 118579867, updated on 20-Mar-2024

Summary

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Gene symbol
Cntn6
Gene description
contactin 6
See related
EnsemblRapid:ENSOTOG00005012671
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychomys torridus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys
Orthologs
human mouse all
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Genomic context

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See Cntn6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
100 current mOncTor1.1 (GCF_903995425.1) 3 NC_050445.1 (94471800..94819643)

Chromosome 3 - NC_050445.1Genomic Context describing neighboring genes Neighboring gene UAP56-interacting factor-like Neighboring gene 40S ribosomal protein S9-like Neighboring gene aspartyl aminopeptidase-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_050445.1 Chromosome 3 Reference mOncTor1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychomys torridus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOncTor1.1

Genomic

  1. NC_050445.1 Reference mOncTor1.1

    Range
    94471800..94819643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036181619.1 → XP_036037512.1  contactin-6 isoform X2

    Conserved Domains (5) summary
    smart00060
    Location:886 → 966
    FN3; Fibronectin type 3 domain
    cd00063
    Location:581 → 674
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:302 → 305
    Ig; Ig strand A [structural motif]
    cd04969
    Location:391 → 479
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:302 → 386
    Ig; Immunoglobulin domain

  2. XM_036181617.1 → XP_036037510.1  contactin-6 isoform X1

    Conserved Domains (5) summary
    smart00060
    Location:903 → 983
    FN3; Fibronectin type 3 domain
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:319 → 322
    Ig; Ig strand A [structural motif]
    cd04969
    Location:408 → 496
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain

  3. XM_036181615.1 → XP_036037508.1  contactin-6 isoform X1

    Related
    ENSOTOP00005016869.1, ENSOTOT00005019004.1
    Conserved Domains (5) summary
    smart00060
    Location:903 → 983
    FN3; Fibronectin type 3 domain
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:319 → 322
    Ig; Ig strand A [structural motif]
    cd04969
    Location:408 → 496
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain

  4. XM_036181616.1 → XP_036037509.1  contactin-6 isoform X1

    Conserved Domains (5) summary
    smart00060
    Location:903 → 983
    FN3; Fibronectin type 3 domain
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:319 → 322
    Ig; Ig strand A [structural motif]
    cd04969
    Location:408 → 496
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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