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chiP chitoporin [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1188256, updated on 6-Oct-2023

Summary

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Gene symbol
chiP
Gene description
chitoporin
Locus tag
VP_RS03750
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VP0760
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Genomic context

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Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_004603.1 (798857..799978)

Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene DUF411 domain-containing protein Neighboring gene heavy metal translocating P-type ATPase Neighboring gene DUF2057 domain-containing protein Neighboring gene glutamate--tRNA ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004603.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chitoporin from the Marine Bacterium Vibrio harveyi: PROBING THE ESSENTIAL ROLES OF TRP136 AT THE SURFACE OF THE CONSTRICTION ZONE. Chumjan W, et al. J Biol Chem, 2015 Jul 31. PMID 26082491, Free PMC Article
  2. Chitin catabolism in the marine bacterium Vibrio furnissii. Identification and molecular cloning of a chitoporin. Keyhani NO, et al. J Biol Chem, 2000 Oct 20. PMID 10913115
  3. The Vibrio cholerae chitin utilization program. Meibom KL, et al. Proc Natl Acad Sci U S A, 2004 Feb 24. PMID 14983042, Free PMC Article
  4. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  5. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
chitoporin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004603.1 Reference assembly

    Range
    798857..799978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005454008.1 MULTISPECIES: chitoporin [Vibrio]

    See identical proteins and their annotated locations for WP_005454008.1

    UniProtKB/TrEMBL
    A0A072FP25, Q87RL8
    Conserved Domains (1) summary
    cd00342
    Location:42 → 373
    gram_neg_porins; Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers ...
Nucleotide Protein
Heading Accession and Version

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