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VP_RS05765 TIGR01621 family pseudouridine synthase [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1188691, updated on 3-Apr-2024

Summary

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Gene symbol
VP_RS05765
Gene description
TIGR01621 family pseudouridine synthase
Locus tag
VP_RS05765
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VP1186
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Genomic context

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Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_004603.1 (1247114..1247806)

Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene sodium-dependent transporter Neighboring gene methyl-accepting chemotaxis protein Neighboring gene class I SAM-dependent methyltransferase Neighboring gene hybrid-cluster NAD(P)-dependent oxidoreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004603.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA. Raychaudhuri S, et al. J Biol Chem, 1999 Jul 2. PMID 10383384
  2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
TIGR01621 family pseudouridine synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004603.1 Reference assembly

    Range
    1247114..1247806
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005462361.1 MULTISPECIES: TIGR01621 family pseudouridine synthase [Vibrio]

    UniProtKB/TrEMBL
    Q87QG3
    Conserved Domains (1) summary
    cl00130
    Location:1 → 221
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
Nucleotide Protein
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Gene LinkOut

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