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tssF type VI secretion system baseplate subunit TssF [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1191725, updated on 17-Dec-2024

Summary

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Gene symbol
tssF
Gene description
type VI secretion system baseplate subunit TssF
Locus tag
VP_RS20115
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VPA1030
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Genomic context

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Location:
chromosome: 2
Sequence:
Chromosome: 2; NC_004605.1 (1085769..1087592, complement)

Chromosome 2 - NC_004605.1Genomic Context describing neighboring genes Neighboring gene type VI secretion system tube protein Hcp Neighboring gene type VI secretion system ATPase TssH Neighboring gene type VI secretion system baseplate subunit TssG Neighboring gene type VI secretion system accessory protein TagJ Neighboring gene type VI secretion system baseplate subunit TssE Neighboring gene type VI secretion system contractile sheath large subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004605.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Pukatzki S, et al. Proc Natl Acad Sci U S A, 2006 Jan 31. PMID 16432199, Free PMC Article
  2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739
  4. In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. Shalom G, et al. Microbiology (Reading), 2007 Aug. PMID 17660433
  5. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Mougous JD, et al. Science, 2006 Jun 9. PMID 16763151, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
type VI secretion system baseplate subunit TssF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004605.1 Reference assembly

    Range
    1085769..1087592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005463819.1 type VI secretion system baseplate subunit TssF [Vibrio parahaemolyticus]

    See identical proteins and their annotated locations for WP_005463819.1

    UniProtKB/TrEMBL
    A0A7Y0S4J1, Q87HD5
    Conserved Domains (1) summary
    TIGR03359
    Location:5 → 607
    VI_chp_6; type VI secretion protein, VC_A0110 family
Nucleotide Protein
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