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hhipl1 HHIP-like 1 [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979756, updated on 21-Mar-2024

Summary

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Gene symbol
hhipl1
Gene description
HHIP-like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
Orthologs
human zebrafish all
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Genomic context

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See hhipl1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 2 NC_052147.1 (6629875..6693346)

Chromosome 2 - NC_052147.1Genomic Context describing neighboring genes Neighboring gene B2 bradykinin receptor-like Neighboring gene uncharacterized LOC119979694 Neighboring gene G-protein coupled receptor 4-like Neighboring gene uncharacterized LOC119962496 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene cytosolic carboxypeptidase 3-like Neighboring gene calmin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052147.1 Chromosome 2 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HHIP-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052147.1 Reference sScyCan1.1 Primary Assembly

    Range
    6629875..6693346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038822388.1 → XP_038678316.1  HHIP-like protein 1 isoform X2

    Conserved Domains (3) summary
    smart00202
    Location:618 → 718
    SR; Scavenger receptor Cys-rich
    pfam03024
    Location:8 → 46
    Folate_rec; Folate receptor family
    cl26817
    Location:115 → 361
    GSDH; Glucose / Sorbosone dehydrogenase

  2. XM_038822378.1 → XP_038678306.1  HHIP-like protein 1 isoform X1

    Conserved Domains (3) summary
    smart00202
    Location:707 → 807
    SR; Scavenger receptor Cys-rich
    pfam03024
    Location:33 → 135
    Folate_rec; Folate receptor family
    cl26817
    Location:204 → 450
    GSDH; Glucose / Sorbosone dehydrogenase
Nucleotide Protein
Heading Accession and Version

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