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LOC119979760 lymphocyte activation gene 3 protein-like [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979760, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119979760
Gene description
lymphocyte activation gene 3 protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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Genomic context

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See LOC119979760 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 16 NC_052161.1 (86991184..87061674, complement)

Chromosome 16 - NC_052161.1Genomic Context describing neighboring genes Neighboring gene tubulin beta-4B chain-like Neighboring gene endothelial cell-selective adhesion molecule-like Neighboring gene T-cell surface glycoprotein CD4-like Neighboring gene BTB/POZ domain-containing protein 17-like Neighboring gene rootletin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052161.1 Chromosome 16 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interleukin-15-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphocyte activation gene 3 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052161.1 Reference sScyCan1.1 Primary Assembly

    Range
    86991184..87061674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038822380.1 → XP_038678308.1  lymphocyte activation gene 3 protein-like isoform X2

    Conserved Domains (3) summary
    smart00409
    Location:116 → 192
    IG; Immunoglobulin
    cd00096
    Location:22 → 27
    Ig; Ig strand C [structural motif]
    cl11960
    Location:21 → 117
    Ig; Immunoglobulin domain

  2. XM_038822381.1 → XP_038678309.1  lymphocyte activation gene 3 protein-like isoform X3

    Conserved Domains (3) summary
    smart00409
    Location:144 → 220
    IG; Immunoglobulin
    cd00096
    Location:22 → 24
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:19 → 145
    Ig; Immunoglobulin domain

  3. XM_038822379.1 → XP_038678307.1  lymphocyte activation gene 3 protein-like isoform X1

    Conserved Domains (3) summary
    smart00409
    Location:144 → 220
    IG; Immunoglobulin
    cd00096
    Location:22 → 24
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:19 → 145
    Ig; Immunoglobulin domain
Nucleotide Protein
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