U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

plch2a phospholipase C, eta 2a [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979762, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
plch2a
Gene description
phospholipase C, eta 2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See plch2a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
26
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 16 NC_052161.1 (126795354..127107889, complement)

Chromosome 16 - NC_052161.1Genomic Context describing neighboring genes Neighboring gene pantothenate kinase 4 (inactive) Neighboring gene probable glutamate receptor Neighboring gene S-antigen protein-like Neighboring gene peroxisomal biogenesis factor 10 Neighboring gene retention in endoplasmic reticulum sorting receptor 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_052161.1 Chromosome 16 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052161.1 Reference sScyCan1.1 Primary Assembly

    Range
    126795354..127107889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038822387.1 → XP_038678315.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X5

    Conserved Domains (5) summary
    cd00275
    Location:753 → 877
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:18 → 124
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:142 → 171
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:142 → 282
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:294 → 723
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  2. XM_038822389.1 → XP_038678317.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X6

    Conserved Domains (5) summary
    cd00275
    Location:730 → 854
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 700
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  3. XM_038822384.1 → XP_038678312.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X2

    Conserved Domains (5) summary
    cd00275
    Location:783 → 907
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 753
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  4. XM_038822386.1 → XP_038678314.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X4

    Conserved Domains (5) summary
    cd00275
    Location:778 → 902
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  5. XM_038822385.1 → XP_038678313.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X3

    Conserved Domains (5) summary
    cd00275
    Location:779 → 903
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  6. XM_038822383.1 → XP_038678311.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X1

    Conserved Domains (5) summary
    cd00275
    Location:785 → 909
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  7. XM_038822393.1 → XP_038678321.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X10

    Conserved Domains (5) summary
    cd00275
    Location:783 → 907
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 753
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  8. XM_038822390.1 → XP_038678318.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X7

    Conserved Domains (5) summary
    cd00275
    Location:785 → 909
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  9. XM_038822391.1 → XP_038678319.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X8

    Conserved Domains (5) summary
    cd00275
    Location:785 → 909
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  10. XM_038822392.1 → XP_038678320.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2a isoform X9

    Conserved Domains (5) summary
    cd00275
    Location:785 → 909
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd13364
    Location:50 → 156
    PH_PLC_eta; Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain
    cd15898
    Location:174 → 203
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:174 → 314
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:326 → 755
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases