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LOC119979764 interferon-induced protein with tetratricopeptide repeats 5-like [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979764, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119979764
Gene description
interferon-induced protein with tetratricopeptide repeats 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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Genomic context

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See LOC119979764 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 16 NC_052161.1 (60846120..60847845, complement)

Chromosome 16 - NC_052161.1Genomic Context describing neighboring genes Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene interferon-induced protein with tetratricopeptide repeats 5-like Neighboring gene uncharacterized LOC119950976 Neighboring gene interferon-induced protein with tetratricopeptide repeats 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052161.1 Chromosome 16 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced protein with tetratricopeptide repeats 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052161.1 Reference sScyCan1.1 Primary Assembly

    Range
    60846120..60847845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038822397.1 → XP_038678325.1  interferon-induced protein with tetratricopeptide repeats 5-like

    Conserved Domains (3) summary
    TIGR02917
    Location:69 → 457
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:182 → 212
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:20 → 92
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
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