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LOC119979765 cytosolic carboxypeptidase 3-like [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979765, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119979765
Gene description
cytosolic carboxypeptidase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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Genomic context

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See LOC119979765 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 2 NC_052147.1 (6736031..7004984, complement)

Chromosome 2 - NC_052147.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119979694 Neighboring gene G-protein coupled receptor 4-like Neighboring gene uncharacterized LOC119962496 Neighboring gene HHIP-like 1 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene calmin-like Neighboring gene dicer 1, ribonuclease type III Neighboring gene uncharacterized LOC119950597 Neighboring gene goosecoid

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052147.1 Chromosome 2 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallocarboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic carboxypeptidase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052147.1 Reference sScyCan1.1 Primary Assembly

    Range
    6736031..7004984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038773113.1 → XP_038629041.1  cytosolic carboxypeptidase 3-like isoform X5

    Conserved Domains (2) summary
    cd06907
    Location:344 → 596
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:196 → 322
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  2. XM_038773093.1 → XP_038629021.1  cytosolic carboxypeptidase 3-like isoform X3

    Conserved Domains (2) summary
    cd06907
    Location:370 → 622
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:238 → 348
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  3. XM_038822401.1 → XP_038678329.1  cytosolic carboxypeptidase 3-like isoform X1

    Conserved Domains (2) summary
    cd06907
    Location:392 → 644
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  4. XM_038773123.1 → XP_038629051.1  cytosolic carboxypeptidase 3-like isoform X5

    Conserved Domains (2) summary
    cd06907
    Location:344 → 596
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:196 → 322
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  5. XM_038773140.1 → XP_038629068.1  cytosolic carboxypeptidase 3-like isoform X5

    Conserved Domains (2) summary
    cd06907
    Location:344 → 596
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:196 → 322
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  6. XM_038773104.1 → XP_038629032.1  cytosolic carboxypeptidase 3-like isoform X4

    Conserved Domains (2) summary
    cd06907
    Location:358 → 610
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:210 → 336
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  7. XM_038773078.1 → XP_038629006.1  cytosolic carboxypeptidase 3-like isoform X1

    Conserved Domains (2) summary
    cd06907
    Location:392 → 644
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  8. XM_038773087.1 → XP_038629015.1  cytosolic carboxypeptidase 3-like isoform X2

    Conserved Domains (2) summary
    cd06907
    Location:392 → 644
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  9. XM_038773147.1 → XP_038629075.1  cytosolic carboxypeptidase 3-like isoform X7

    Conserved Domains (2) summary
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
    cl11393
    Location:392 → 520
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

  10. XM_038773153.1 → XP_038629081.1  cytosolic carboxypeptidase 3-like isoform X7

    Conserved Domains (2) summary
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
    cl11393
    Location:392 → 520
    Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

  11. XM_038773132.1 → XP_038629060.1  cytosolic carboxypeptidase 3-like isoform X6

    Conserved Domains (2) summary
    cd06907
    Location:392 → 644
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:244 → 370
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
Nucleotide Protein
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