U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC119979767 inorganic pyrophosphatase-like [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119979767, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC119979767
Gene description
inorganic pyrophosphatase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC119979767 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 16 NC_052161.1 (79329143..79403643, complement)

Chromosome 16 - NC_052161.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E family member 1c Neighboring gene solute carrier family 25 member 16 Neighboring gene DPY30 domain containing 2 Neighboring gene peroxiredoxin-like 2A

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_052161.1 Chromosome 16 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inorganic diphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphate-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
inorganic pyrophosphatase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052161.1 Reference sScyCan1.1 Primary Assembly

    Range
    79329143..79403643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038822399.1 → XP_038678327.1  inorganic pyrophosphatase-like

    Conserved Domains (1) summary
    cl00217
    Location:1 → 195
    pyrophosphatase; Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases