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HEATR3-AS1 HEATR3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 120017339, updated on 28-Oct-2024

Summary

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Official Symbol
HEATR3-AS1provided by HGNC
Official Full Name
HEATR3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55406
See related
AllianceGenome:HGNC:55406
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See HEATR3-AS1 in Genome Data Viewer
Location:
16q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (50043840..50066324, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55841592..55864066, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (50077751..50100235, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7464 Neighboring gene nuclear receptor coactivator 5 like, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50006784-50007284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50007285-50007785 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7465 Neighboring gene NANOG hESC enhancer GRCh37_chr16:50055403-50055909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:50058825-50059326 Neighboring gene MPRA-validated peak2585 silencer Neighboring gene MPRA-validated peak2586 silencer Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1 Neighboring gene MPRA-validated peak2587 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50080479-50080979 Neighboring gene regulation of nuclear pre-mRNA domain containing 1A pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr16:50094586-50094761 Neighboring gene Sharpr-MPRA regulatory region 4020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7469 Neighboring gene actin gamma 1 pseudogene 16 Neighboring gene MPRA-validated peak2588 silencer Neighboring gene HEAT repeat containing 3 Neighboring gene RNY4 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50157041-50157541 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:50177493-50177653 Neighboring gene ribosomal protein L10 pseudogene 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186390.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007610

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    50043840..50066324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    55841592..55864066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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