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LOC120066955 paired mesoderm homeobox protein 2-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120066955, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120066955
Gene description
paired mesoderm homeobox protein 2-like
See related
EnsemblRapid:ENSSNMG00000018015
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120066955 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 22 NC_052328.1 (12194980..12197011)

Chromosome 22 - NC_052328.1Genomic Context describing neighboring genes Neighboring gene rho-related GTP-binding protein RhoQ-like Neighboring gene suppressor of cytokine signaling 5-like Neighboring gene multiple coagulation factor deficiency 2, ER cargo receptor complex subunit Neighboring gene tetratricopeptide repeat domain 7A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052328.1 Chromosome 22 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired mesoderm homeobox protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052328.1 Reference SaNama_1.0 Primary Assembly

    Range
    12194980..12197011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039018292.1 → XP_038874220.1  paired mesoderm homeobox protein 2-like

    UniProtKB/TrEMBL
    A0A8U1FCU9
    Related
    ENSSNMP00000023682.1, ENSSNMT00000027381.1
    Conserved Domains (2) summary
    COG5576
    Location:43 → 157
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:64 → 118
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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