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LOC120066973 testican-2-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120066973, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120066973
Gene description
testican-2-like
See related
EnsemblRapid:ENSSNMG00000013398
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120066973 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 22 NC_052328.1 (1888266..2027741)

Chromosome 22 - NC_052328.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 16 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene secretion associated, Ras related GTPase 1Aa Neighboring gene inorganic pyrophosphatase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052328.1 Chromosome 22 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testican-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052328.1 Reference SaNama_1.0 Primary Assembly

    Range
    1888266..2027741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039018310.1 → XP_038874238.1  testican-2-like

    UniProtKB/TrEMBL
    A0A8U1FCR8
    Related
    ENSSNMP00000016990.1, ENSSNMT00000019981.1
    Conserved Domains (3) summary
    cd16238
    Location:196 → 307
    EFh_SPARC_TICN2; EF-hand, extracellular calcium-binding (EC) motif, found in testican-2 (TICN2)
    pfam00086
    Location:310 → 373
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam07648
    Location:131 → 177
    Kazal_2; Kazal-type serine protease inhibitor domain
Nucleotide Protein
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