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Defa5-ps2 defensin alpha 5, pseudogene 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 120097536, updated on 9-Dec-2024

Summary

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Official Symbol
Defa5-ps2provided by RGD
Official Full Name
defensin alpha 5, pseudogene 2provided by RGD
Primary source
RGD:41289242
See related
AllianceGenome:RGD:41289242
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Defa12-ps
Summary
Predicted to be involved in defense response to bacterium; defense response to fungus; and killing of cells of another organism. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Defa5-ps2 in Genome Data Viewer
Location:
16q12.5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (77094241..77095164, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (70391781..70392695, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene defensin alpha 24 Neighboring gene defensin alpha-like 1 Neighboring gene defensin alpha-like 1, pseudogene 1 Neighboring gene defensin alpha 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes. Patil A, et al. Physiol Genomics, 2004 Dec 15. PMID 15494476

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • neutrophil antibiotic peptide NP-2-like

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
  
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
  
involved_in killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    77094241..77095164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version