U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

oat ornithine aminotransferase [ Pimephales promelas (fathead minnow) ]

Gene ID: 120487119, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
oat
Gene description
ornithine aminotransferase
Locus tag
F2P79_014042
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See oat in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121277.1 (7489338..7516199, complement)

NW_024121277.1Genomic Context describing neighboring genes Neighboring gene homeobox protein HMX3 Neighboring gene BUB3 mitotic checkpoint protein Neighboring gene uncharacterized si:zfos-911d5.4 Neighboring gene carboxypeptidase X (M14 family), member 2 Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase Neighboring gene family with sequence similarity 53 member B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024121277 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ornithine aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine catabolic process to proline via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ornithine aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121277.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    7489338..7516199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039683336.1 → XP_039539270.1  ornithine aminotransferase, mitochondrial

    Conserved Domains (1) summary
    TIGR01885
    Location:37 → 433
    Orn_aminotrans; ornithine aminotransferase

RNA

  1. XR_005624387.1 RNA Sequence

  2. XR_005624385.1 RNA Sequence

  3. XR_005624386.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.