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LOC121056726 ethylene-responsive transcription factor ERF039-like [ Oryza brachyantha (malo sina) ]

Gene ID: 121056726, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121056726
Gene description
ethylene-responsive transcription factor ERF039-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC121056726 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 1 NC_023163.2 (29640599..29642941)

Chromosome 1 - NC_023163.2Genomic Context describing neighboring genes Neighboring gene abhydrolase domain-containing protein C22H12.03 Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene UPF0301 protein Cpar_0662-like Neighboring gene transfer RNA isoleucine (anticodon UAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023163.2 Chromosome 1 Reference ObraRS2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF039-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023163.2 Reference ObraRS2 Primary Assembly

    Range
    29640599..29642941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040529983.1 → XP_040385917.1  ethylene-responsive transcription factor ERF039-like

    Conserved Domains (1) summary
    cl00033
    Location:58 → 115
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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