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LOC121331286 actin-related protein 2/3 complex subunit 1A [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121331286, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121331286
Gene description
actin-related protein 2/3 complex subunit 1A
See related
EnsemblRapid:ENSPAHG00005032385
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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Genomic context

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See LOC121331286 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 18 NC_054551.1 (2465322..2471121)

Chromosome 18 - NC_054551.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase SMURF1 Neighboring gene importin subunit alpha-5-like Neighboring gene actin related protein 2/3 complex, subunit 1B Neighboring gene WD repeat domain phosphoinositide-interacting protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054551.1 Chromosome 18 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-related protein 2/3 complex subunit 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054551.1 Reference ASM1765450v1 Primary Assembly

    Range
    2465322..2471121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041278574.1 → XP_041134508.1  actin-related protein 2/3 complex subunit 1A

    Related
    ENSPAHP00005043278.1, ENSPAHT00005048315.1
    Conserved Domains (2) summary
    sd00039
    Location:11 → 50
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:46 → 276
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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