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LOC121422847 TOM1-like protein 2 [ Lytechinus variegatus (green sea urchin) ]

Gene ID: 121422847, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121422847
Gene description
TOM1-like protein 2
See related
EnsemblRapid:LOC121422847
Gene type
protein coding
RefSeq status
MODEL
Organism
Lytechinus variegatus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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Genomic context

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See LOC121422847 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Lvar_3.0 (GCF_018143015.1) 10 NC_054749.1 (35984854..36014242)

Chromosome 10 - NC_054749.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat protein lrrA-like Neighboring gene centrosomal protein 43-like Neighboring gene sorcin-like Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054749.1 Chromosome 10 Reference Lvar_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lytechinus variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lvar_3.0 Primary Assembly

Genomic

  1. NC_054749.1 Reference Lvar_3.0 Primary Assembly

    Range
    35984854..36014242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041618062.1 → XP_041473996.1  TOM1-like protein 2 isoform X1

    Related
    XP_041473996.1, XM_041618062.1
    Conserved Domains (3) summary
    PHA03247
    Location:293 → 475
    PHA03247; large tegument protein UL36; Provisional
    cd03565
    Location:12 → 146
    VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
    cl03906
    Location:211 → 305
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

  2. XM_041618063.1 → XP_041473997.1  TOM1-like protein 2 isoform X2

    Related
    XP_041473997.1, XM_041618063.1
    Conserved Domains (3) summary
    PHA03247
    Location:293 → 475
    PHA03247; large tegument protein UL36; Provisional
    cd03565
    Location:12 → 146
    VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
    cl03906
    Location:211 → 305
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

  3. XM_041618064.1 → XP_041473998.1  TOM1-like protein 2 isoform X3

    Related
    XP_041473998.1, XM_041618064.1
    Conserved Domains (3) summary
    PHA03247
    Location:293 → 458
    PHA03247; large tegument protein UL36; Provisional
    cd03565
    Location:12 → 146
    VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
    cl03906
    Location:211 → 305
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

  4. XM_041618065.1 → XP_041473999.1  TOM1-like protein 2 isoform X4

    Related
    XP_041473999.1, XM_041618065.1
    Conserved Domains (3) summary
    PHA03247
    Location:293 → 458
    PHA03247; large tegument protein UL36; Provisional
    cd03565
    Location:12 → 146
    VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
    cl03906
    Location:211 → 305
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

  5. XM_041618066.1 → XP_041474000.1  TOM1-like protein 2 isoform X5

    Related
    XP_041474000.1, XM_041618066.1
    Conserved Domains (3) summary
    PHA03247
    Location:293 → 475
    PHA03247; large tegument protein UL36; Provisional
    cd03565
    Location:12 → 146
    VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
    cl03906
    Location:211 → 305
    GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins
Nucleotide Protein
Heading Accession and Version

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