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LOC121677304 uncharacterized LOC121677304 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 121677304, updated on 16-Nov-2023

Summary

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Gene symbol
LOC121677304
Gene description
uncharacterized LOC121677304
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
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Genomic context

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See LOC121677304 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 9 NC_052055.2 (59139029..59144849, complement)

Chromosome 9 - NC_052055.2Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase I subunit RPA34-like Neighboring gene uncharacterized LOC119822838 Neighboring gene uncharacterized LOC119822840 Neighboring gene uncharacterized LOC119822839 Neighboring gene sperm motility kinase 3A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052055.2 Chromosome 9 Reference mArvAmp1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in virion assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein LOC121677304

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052055.2 Reference mArvAmp1.2

    Range
    59139029..59144849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042055677.1 → XP_041911611.1  LOW QUALITY PROTEIN: uncharacterized protein LOC121677304

    Conserved Domains (5) summary
    cd06095
    Location:542 → 623
    RP_RTVL_H_like; Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements
    cd03715
    Location:706 → 921
    RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
    cd09273
    Location:1168 → 1308
    RNase_HI_RT_Bel; Bel/Pao family of RNase HI in long-term repeat retroelements
    pfam01141
    Location:151 → 214
    Gag_p12; Gag polyprotein, inner coat protein p12
    cl07828
    Location:1335 → 1426
    zf-H2C2; His(2)-Cys(2) zinc finger
Nucleotide Protein
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