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Spacdr sperm acrosome developmental regulator [ Mus musculus (house mouse) ]

Gene ID: 122152370, updated on 27-Nov-2024

Summary

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Official Symbol
Spacdrprovided by MGI
Official Full Name
sperm acrosome developmental regulatorprovided by MGI
Primary source
MGI:MGI:7523879
See related
Ensembl:ENSMUSG00000029723 AllianceGenome:MGI:7523879
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human all
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Genomic context

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See Spacdr in Genome Data Viewer
Location:
5 G2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137759963..137766715)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1 Neighboring gene Tsc22 domain family, member 4 Neighboring gene predicted gene, 57848 Neighboring gene STARR-positive B cell enhancer ABC_E4797 Neighboring gene protein phosphatase 1, regulatory subunit 35 Neighboring gene STARR-positive B cell enhancer ABC_E857 Neighboring gene STARR-positive B cell enhancer ABC_E1312 Neighboring gene STARR-positive B cell enhancer ABC_E4798 Neighboring gene methylphosphate capping enzyme Neighboring gene zinc finger, CW type with PWWP domain 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000071.7 Chromosome 5 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Testis-Specific Gene C7orf61 Is Involved in Mouse Sperm-Egg Fusion. Wu Y, et al. Urol J, 2024 Oct 12. PMID 38863317
  2. TSC22D4 is a molecular output of hepatic wasting metabolism. Jones A, et al. EMBO Mol Med, 2013 Feb. PMID 23307490, Free PMC Article
  3. Subcellular TSC22D4 localization in cerebellum granule neurons of the mouse depends on development and differentiation. Canterini S, et al. Cerebellum, 2012 Mar. PMID 20878296
  4. THG-1pit moves to nucleus at the onset of cerebellar granule neurons apoptosis. Canterini S, et al. Mol Cell Neurosci, 2009 Feb. PMID 19084601
  5. Multiple TSC22D4 iso-/phospho-glycoforms display idiosyncratic subcellular localizations and interacting protein partners. Canterini S, et al. FEBS J, 2013 Mar. PMID 23305244

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Testis-Specific Gene C7orf61 Is Involved in Mouse Sperm-Egg Fusion.
    Title: Testis-Specific Gene C7orf61 Is Involved in Mouse Sperm-Egg Fusion.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Readthrough Gm57848

Readthrough gene: Gm57848, Included gene: Tsc22d4

Homology

General protein information

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Preferred Names
sperm acrosome developmental regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395754.1 → NP_001382683.1  sperm acrosome developmental regulator

    Status: VALIDATED

    Source sequence(s)
    AC125063
    UniProtKB/TrEMBL
    D3Z6V5
    Related
    ENSMUSP00000031738.5, ENSMUST00000031738.5
    Conserved Domains (1) summary
    pfam15775
    Location:20 → 210
    DUF4703; Domain of unknown function (DUF4703)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    137759963..137766715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials