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LOC122154939 helix-loop-helix protein 13-like [ Tyto alba (common barn owl) ]

Gene ID: 122154939, updated on 3-Aug-2024

Summary

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Gene symbol
LOC122154939
Gene description
helix-loop-helix protein 13-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
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Genomic context

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See LOC122154939 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881328.1 (42529739..42531976)

NW_024881328.1Genomic Context describing neighboring genes Neighboring gene TRAF3 interacting protein 1 Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene twist family bHLH transcription factor 2 Neighboring gene uncharacterized LOC116965201

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024881328 Unplaced Scaffold Reference T.alba_DEE_v4.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helix-loop-helix protein 13-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881328.1 Reference T.alba_DEE_v4.0

    Range
    42529739..42531976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042808474.1 → XP_042664408.1  helix-loop-helix protein 13-like

    Conserved Domains (1) summary
    cd11416
    Location:63 → 121
    bHLH_TS_ceHLH13_like; basic helix-loop-helix (bHLH) domain found in Caenorhabditis elegans Helix-loop-helix protein 13 (HLH13) and similar proteins
Nucleotide Protein
Heading Accession and Version

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