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POLR2J2-UPK3BL1 POLR2J2-UPK3BL1 readthrough [ Homo sapiens (human) ]

Gene ID: 123258400, updated on 12-Sep-2024

Summary

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Gene symbol
POLR2J2-UPK3BL1
Gene description
POLR2J2-UPK3BL1 readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring POLR2J2 (RNA polymerase II subunit J2) and UPK3BL1 (uroplakin 3B like 1) genes on chromosome 7. The readthrough transcript is unlikely to produce a protein product. [provided by RefSeq, Oct 2021]
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Genomic context

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See POLR2J2-UPK3BL1 in Genome Data Viewer
Location:
7q22.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (102637025..102671663, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (102277472..102312110, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901712 Neighboring gene uncharacterized LOC124901714 Neighboring gene RAS p21 protein activator 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102250895-102251509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102252774-102253416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102253600-102254568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102255538-102256506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102264455-102264956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102264957-102265456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102281267-102281768 Neighboring gene uroplakin 3B like 1 Neighboring gene speedy/RINGO cell cycle regulator family member E2B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102321101-102321878 Neighboring gene RNA polymerase II subunit J2 Neighboring gene uncharacterized LOC124901713 Neighboring gene RAS p21 protein activator 4D, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:102348051-102348175 Neighboring gene Sharpr-MPRA regulatory region 2028 Neighboring gene family with sequence similarity 185 member A Neighboring gene ribosomal protein L7a pseudogene 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • MGC105050

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_173352.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105052

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    102637025..102671663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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