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U2A small nuclear ribonucleoprotein polypeptide A'-like U2A [ Chrysoperla carnea ]

Gene ID: 123306110, updated on 15-May-2024

Summary

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Gene symbol
U2A
Gene description
small nuclear ribonucleoprotein polypeptide A'-like U2A
See related
EnsemblRapid:ENSCAYG00005007112
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysoperla carnea
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Neuroptera; Hemerobiiformia; Chrysopidae; Chrysopinae; Chrysoperla
Orthologs
fruit fly all
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Genomic context

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See U2A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
100 current inChrCarn1.1 (GCF_905475395.1) 1 NC_058337.1 (118290286..118295548)

Chromosome 1 - NC_058337.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase I, mitochondrial Neighboring gene uncharacterized LOC123290790 Neighboring gene Meiotic central spindle Neighboring gene Proteasome beta2 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058337.1 Chromosome 1 Reference inChrCarn1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable U2 small nuclear ribonucleoprotein A'

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysoperla carnea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference inChrCarn1.1

Genomic

  1. NC_058337.1 Reference inChrCarn1.1

    Range
    118290286..118295548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044887991.1 → XP_044743926.1  probable U2 small nuclear ribonucleoprotein A'

    Related
    ENSCAYP00005010442.1, ENSCAYT00005010941.1
    Conserved Domains (2) summary
    sd00031
    Location:46 → 65
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:41 → 109
    internalin_A; class 1 internalin InlA
Nucleotide Protein
Heading Accession and Version

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