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cwo transcription factor cwo [ Chrysoperla carnea ]

Gene ID: 123306187, updated on 24-May-2024

Summary

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Gene symbol
cwo
Gene description
transcription factor cwo
See related
EnsemblRapid:ENSCAYG00005005820
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysoperla carnea
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Neuroptera; Hemerobiiformia; Chrysopidae; Chrysopinae; Chrysoperla
Orthologs
fruit fly all
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Genomic context

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See cwo in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
100 current inChrCarn1.1 (GCF_905475395.1) 1 NC_058337.1 (82754976..82830465)

Chromosome 1 - NC_058337.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit G-like Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like Neighboring gene transmembrane 9 superfamily protein member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058337.1 Chromosome 1 Reference inChrCarn1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor cwo

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysoperla carnea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference inChrCarn1.1

Genomic

  1. NC_058337.1 Reference inChrCarn1.1

    Range
    82754976..82830465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044888086.1 → XP_044744021.1  transcription factor cwo isoform X2

    Conserved Domains (2) summary
    cd11440
    Location:71 → 130
    bHLH-O_Cwo_like; basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein clockwork orange (Cwo) and similar proteins
    cl02638
    Location:140 → 178
    Hairy_orange; Hairy Orange

  2. XM_044888085.1 → XP_044744020.1  transcription factor cwo isoform X1

    Related
    ENSCAYP00005008541.1, ENSCAYT00005008955.1
    Conserved Domains (2) summary
    cd11440
    Location:72 → 131
    bHLH-O_Cwo_like; basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein clockwork orange (Cwo) and similar proteins
    cl02638
    Location:141 → 179
    Hairy_orange; Hairy Orange

  3. XM_044888088.1 → XP_044744023.1  transcription factor cwo isoform X3

    Related
    ENSCAYP00005008497.1, ENSCAYT00005008910.1
    Conserved Domains (2) summary
    cd11440
    Location:26 → 85
    bHLH-O_Cwo_like; basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein clockwork orange (Cwo) and similar proteins
    cl02638
    Location:95 → 133
    Hairy_orange; Hairy Orange

  4. XM_044888089.1 → XP_044744024.1  transcription factor cwo isoform X4

    Conserved Domains (2) summary
    cd11440
    Location:4 → 63
    bHLH-O_Cwo_like; basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein clockwork orange (Cwo) and similar proteins
    cl02638
    Location:73 → 111
    Hairy_orange; Hairy Orange
Nucleotide Protein
Heading Accession and Version

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