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SOGA3-KIAA0408 SOGA3-KIAA0408 readthrough [ Homo sapiens (human) ]

Gene ID: 123956153, updated on 12-Sep-2024

Summary

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Gene symbol
SOGA3-KIAA0408
Gene description
SOGA3-KIAA0408 readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene represents readthrough transcription between SOGA3 (GeneID: 387104) and KIAA0408 (GeneID:9729). It is presumed to be non-coding because the principal open reading frame (ORF) makes the transcript a candidate for nonsense-mediated mRNA decay (NMD). [provided by RefSeq, Jan 2022]
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Genomic context

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See SOGA3-KIAA0408 in Genome Data Viewer
Location:
6q22.33
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (127438406..127519335, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (128627332..128708261, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (127759551..127840480, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene cornichon family member 4 pseudogene Neighboring gene ribosomal protein L17 pseudogene 23 Neighboring gene KIAA0408 Neighboring gene uncharacterized LOC124901399 Neighboring gene Sharpr-MPRA regulatory region 7566 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:127802337-127803536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25041 Neighboring gene MTCL family member 3 Neighboring gene uncharacterized LOC107986642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:127835952-127836476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17529 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17530 Neighboring gene chromosome 6 open reading frame 58 Neighboring gene uncharacterized LOC105377995

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • FLJ34097, FLJ39171

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_174482.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    127438406..127519335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    128627332..128708261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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