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GAR1-DT GAR1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 124900758, updated on 28-Oct-2024

Summary

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Official Symbol
GAR1-DTprovided by HGNC
Official Full Name
GAR1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55191
See related
Ensembl:ENSG00000272795 AllianceGenome:HGNC:55191
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See GAR1-DT in Genome Data Viewer
Location:
4q25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (109812919..109815382, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (113114982..113117444, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (110734075..110736538, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:110651344-110652220 Neighboring gene complement factor I Neighboring gene uncharacterized LOC124900757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21808 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21812 Neighboring gene GAR1 ribonucleoprotein Neighboring gene retinal pigment epithelium-derived rhodopsin homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186620.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126283
    Related
    ENST00000609440.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    109812919..109815382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    113114982..113117444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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