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LOC124905135 collagen alpha-1(III) chain-like [ Homo sapiens (human) ]

Gene ID: 124905135, updated on 27-Aug-2024

Summary

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Gene symbol
LOC124905135
Gene description
collagen alpha-1(III) chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124905135 in Genome Data Viewer
Location:
22q13.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (46044644..46113928)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (46529517..46598616)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13892 Neighboring gene uncharacterized LOC124905134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46424640-46425193 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:46427338-46428112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46428113-46428886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13895 Neighboring gene uncharacterized LOC124905136 Neighboring gene long intergenic non-protein coding RNA 899 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19231 Neighboring gene PRR34 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13898 Neighboring gene PRR34 long non-coding RNA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13899 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46467816-46468370 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46468371-46468923 Neighboring gene long intergenic non-protein coding RNA 2939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46480369-46480940 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:46481213-46482412 Neighboring gene uncharacterized LOC112268288 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46483852-46484461 Neighboring gene MIRLET7B host gene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46500537-46501051 Neighboring gene microRNA 3619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46506657-46507190 Neighboring gene microRNA let-7a-3 Neighboring gene microRNA let-7b Neighboring gene microRNA 4763 Neighboring gene uncharacterized LOC124905137 Neighboring gene uncharacterized LOC124905138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46533901-46534402 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13903 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19232 Neighboring gene uncharacterized LOC105373074 Neighboring gene peroxisome proliferator activated receptor alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

General protein information

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Preferred Names
collagen alpha-1(III) chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    46044644..46113928
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047441696.1 → XP_047297652.1  collagen alpha-1(III) chain-like

  2. XM_047441695.1 → XP_047297651.1  collagen alpha-1(III) chain-like

  3. XM_047441697.1 → XP_047297653.1  collagen alpha-1(III) chain-like

  4. XM_047441694.1 → XP_047297650.1  collagen alpha-1(III) chain-like

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    46529517..46598616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054326270.1 → XP_054182245.1  collagen alpha-1(III) chain-like

  2. XM_054326269.1 → XP_054182244.1  collagen alpha-1(III) chain-like

  3. XM_054326271.1 → XP_054182246.1  collagen alpha-1(III) chain-like

  4. XM_054326267.1 → XP_054182242.1  collagen alpha-1(III) chain-like

  5. XM_054326268.1 → XP_054182243.1  collagen alpha-1(III) chain-like

Nucleotide Protein
Heading Accession and Version

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