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LOC127267063 H3K4me1 hESC enhancer GRCh37_chr1:4037314-4037814 [ Homo sapiens (human) ]

Gene ID: 127267063, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127267063
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:4037314-4037814
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127267063 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (3977254..3977754)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (3489161..3489661)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (4037314..4037814)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3816499-3817067 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3817068-3817637 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 130 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3827787-3828672 Neighboring gene long intergenic non-protein coding RNA 1134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4015013-4015738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4017862-4018398 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4018399-4018934 Neighboring gene long intergenic non-protein coding RNA 1346 Neighboring gene long intergenic non-protein coding RNA 1345 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037815-4038315 Neighboring gene long intergenic non-protein coding RNA 2780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4071131-4071631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4086572-4087072 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_7992 and experimental_7995 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4093716-4094491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118474-4118974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4118975-4119475 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:4170302-4171501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4178536-4179040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4179041-4179543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4197352-4197952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212141-4212642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4212643-4213142 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:4233037-4233538 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:4236159-4236736 Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 132 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4388931-4389431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4401483-4401984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4401985-4402484 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:4440066-4441265 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4483073-4483573 Neighboring gene long intergenic non-protein coding RNA 1777

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_088938.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    3977254..3977754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    3489161..3489661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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