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LOC127267595 H3K4me1 hESC enhancer GRCh37_chr1:15691409-15691909 [ Homo sapiens (human) ]

Gene ID: 127267595, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127267595
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:15691409-15691909
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127267595 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (15364913..15365413)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (14809558..14810058)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (15691409..15691909)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene forkhead associated phosphopeptide binding domain 1 Neighboring gene uncharacterized LOC124903852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15651115-15651879 Neighboring gene uncharacterized LOC124903851 Neighboring gene FHAD1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 234 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:15678468-15679667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 235 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15710597-15711244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15711245-15711892 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:15723563-15723730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15736144-15737006 Neighboring gene EFHD2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15742803-15743302 Neighboring gene Sharpr-MPRA regulatory region 12140 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15752556-15753456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15753457-15754355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15757008-15757508 Neighboring gene EF-hand domain family member D2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15760169-15760668 Neighboring gene chymotrypsin C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_089470.1 

    Range
    101..601
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    15364913..15365413
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    14809558..14810058
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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