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LOC127270073 H3K4me1 hESC enhancer GRCh37_chr1:117142207-117142708 [ Homo sapiens (human) ]

Gene ID: 127270073, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127270073
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:117142207-117142708
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127270073 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (116599585..116600086)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (116610033..116610534)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (117142207..117142708)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CD58 molecule Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1233 Neighboring gene uncharacterized LOC124904385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1572 Neighboring gene uncharacterized LOC105378924 Neighboring gene immunoglobulin superfamily member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:117150835-117151334 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117156699-117157269 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:117161725-117162232 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:117184821-117185506 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117185507-117186190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117188080-117188811 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117188812-117189542 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117189543-117190273 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1235 Neighboring gene microRNA 320b-1 Neighboring gene CRISPRi-validated cis-regulatory element chr1.8052 Neighboring gene long intergenic non-protein coding RNA 2868 Neighboring gene uncharacterized LOC105378926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_091929.1 

    Range
    101..602
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    116599585..116600086
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    116610033..116610534
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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