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LOC127273223 OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44690601-44691200 [ Homo sapiens (human) ]

Gene ID: 127273223, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127273223
Gene description
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44690601-44691200
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors and is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127273223 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (44463462..44464061)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (44468724..44469323)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (44690601..44691200)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905998 Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene uncharacterized LOC124907759 Neighboring gene uncharacterized LOC124905999 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44689999-44690600 Neighboring gene uncharacterized LOC124907758 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:44771195-44771973 Neighboring gene Sharpr-MPRA regulatory region 6726 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44816361-44817060 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11432 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:44907608-44908156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45014758-45015258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45015259-45015759 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:45017091-45017794 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:45028054-45028854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45028855-45029655 Neighboring gene VISTA enhancer hs541 Neighboring gene uncharacterized LOC105374573

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095074.1 

    Range
    101..700
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    44463462..44464061
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    44468724..44469323
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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