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LOC127398812 NANOG hESC enhancer GRCh37_chr3:137413714-137414679 [ Homo sapiens (human) ]

Gene ID: 127398812, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127398812
Gene description
NANOG hESC enhancer GRCh37_chr3:137413714-137414679
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127398812 in Genome Data Viewer
Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (137694872..137695837)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (140435532..140436497)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (137413714..137414679)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:137261039-137261538 Neighboring gene MTCH2 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:137301315-137301870 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:137314254-137314812 Neighboring gene uncharacterized LOC105374126 Neighboring gene NANOG hESC enhancer GRCh37_chr3:137366045-137366546 Neighboring gene nucleophosmin 1 pseudogene 17 Neighboring gene SOX14 promoter region Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:137485043-137485739 Neighboring gene SRY-box transcription factor 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_100778.1 

    Range
    101..1066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    137694872..137695837
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    140435532..140436497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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