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LOC127408682 NANOG hESC enhancer GRCh37_chr7:25773276-25773786 [ Homo sapiens (human) ]

Gene ID: 127408682, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127408682
Gene description
NANOG hESC enhancer GRCh37_chr7:25773276-25773786
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127408682 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (25733656..25734166)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (25869102..25869612)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (25773276..25773786)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:25560334-25561533 Neighboring gene MPRA-validated peak6444 silencer Neighboring gene long intergenic non-protein coding RNA 3007 Neighboring gene VISTA enhancer hs1600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:25728911-25729412 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25736154-25736771 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:25772342-25773008 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:25783555-25784148 Neighboring gene VISTA enhancer hs1325 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25869720-25870292 Neighboring gene uncharacterized LOC100506236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25770 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18026 Neighboring gene VISTA enhancer hs1465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25771 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25772 Neighboring gene uncharacterized LOC105375199 Neighboring gene uncharacterized LOC105375200

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_110650.1 

    Range
    101..611
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    25733656..25734166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    25869102..25869612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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