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LOC127408684 OCT4-NANOG hESC enhancer GRCh37_chr7:25869720-25870292 [ Homo sapiens (human) ]

Gene ID: 127408684, updated on 12-Sep-2024

Summary

Gene symbol
LOC127408684
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr7:25869720-25870292
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Oct 2022]
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Genomic context

See LOC127408684 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (25830100..25830672)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (25965544..25966116)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (25869720..25870292)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:25560334-25561533 Neighboring gene MPRA-validated peak6444 silencer Neighboring gene long intergenic non-protein coding RNA 3007 Neighboring gene VISTA enhancer hs1600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:25728911-25729412 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25736154-25736771 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:25772342-25773008 Neighboring gene NANOG hESC enhancer GRCh37_chr7:25773276-25773786 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:25783555-25784148 Neighboring gene VISTA enhancer hs1325 Neighboring gene uncharacterized LOC100506236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25770 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18026 Neighboring gene VISTA enhancer hs1465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25771 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25772 Neighboring gene uncharacterized LOC105375199 Neighboring gene uncharacterized LOC105375200

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_110652.1 

    Range
    101..673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    25830100..25830672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    25965544..25966116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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