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LOC127457413 H3K4me1 hESC enhancer GRCh37_chr7:108853449-108853948 [ Homo sapiens (human) ]

Gene ID: 127457413, updated on 12-Sep-2024

Summary

Gene symbol
LOC127457413
Gene description
H3K4me1 hESC enhancer GRCh37_chr7:108853449-108853948
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

See LOC127457413 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (109213392..109213891)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (110537920..110538419)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (108853449..108853948)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2903 Neighboring gene BUB3 mitotic checkpoint protein pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:108852947-108853448 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:108871548-108872106 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:109237086-109237867 Neighboring gene NANOG hESC enhancer GRCh37_chr7:109251582-109252157 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:109287079-109288278 Neighboring gene immunoglobulin binding protein 1 pseudogene Neighboring gene CTD small phosphatase 2 pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_112187.1 

    Range
    101..600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    109213392..109213891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    110537920..110538419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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