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LOC127459481 H3K4me1 hESC enhancer GRCh37_chr8:49731577-49732548 [ Homo sapiens (human) ]

Gene ID: 127459481, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127459481
Gene description
H3K4me1 hESC enhancer GRCh37_chr8:49731577-49732548
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127459481 in Genome Data Viewer
Location:
chromosome: 8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (48819018..48819989)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (49196896..49197867)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (49731577..49732548)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929268 Neighboring gene long intergenic non-protein coding RNA 2847 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49536704-49537208 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49539781-49540980 Neighboring gene long intergenic non-protein coding RNA 3054 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:49549377-49550576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49558419-49558919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49608983-49609482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49647232-49647906 Neighboring gene calaxin Neighboring gene uncharacterized LOC105375825 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49700925-49702124 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:49711615-49712177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49770863-49771363 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49777111-49777698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27334 Neighboring gene uncharacterized LOC107986942 Neighboring gene snail family transcriptional repressor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_114250.1 

    Range
    101..1072
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    48819018..48819989
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    49196896..49197867
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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