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LOC127816818 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139458927-139459788 [ Homo sapiens (human) ]

Gene ID: 127816818, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127816818
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139458927-139459788
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127816818 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (136564475..136565336)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (148796336..148797197)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139458927..139459788)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20529 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139441357-139442268 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:139444236-139445435 Neighboring gene microRNA 4674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29316 Neighboring gene NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139458066-139458926 Neighboring gene VISTA enhancer hs2207 Neighboring gene uncharacterized LOC124902311 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139473242-139473768 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139479375-139480026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139493297-139493830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139494899-139495430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139495673-139496524 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:139499139-139499319 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139499925-139500774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139501625-139502474 Neighboring gene long intergenic non-protein coding RNA 1451 Neighboring gene Sharpr-MPRA regulatory region 9516

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_118301.1 

    Range
    101..962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    136564475..136565336
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    148796336..148797197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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