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LOC127820994 H3K4me1 hESC enhancer GRCh37_chr11:46942027-46942526 [ Homo sapiens (human) ]

Gene ID: 127820994, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127820994
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:46942027-46942526
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127820994 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (46920476..46920975)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (47077344..47077843)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (46942027..46942526)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 5 Neighboring gene small nucleolar RNA, C/D box 67 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:46847736-46848288 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:46848289-46848839 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:46865110-46866015 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:46867074-46867651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4685 Neighboring gene LRP4 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:46917923-46918648 Neighboring gene LDL receptor related protein 4 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:46927480-46928314 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:46928315-46929147 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:46938291-46939162 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3317 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3319 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3318 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:46940326-46940830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:46941525-46942026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:46946339-46946839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4686 Neighboring gene centriolar satellite-associated tubulin polyglutamylase complex regulator 1 Neighboring gene uncharacterized LOC124902670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:47029651-47030151 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:47054947-47055522 Neighboring gene ATPase Get3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_122451.1 

    Range
    101..600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    46920476..46920975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    47077344..47077843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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