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LOC127826493 H3K4me1 hESC enhancer GRCh37_chr13:72795269-72795769 [ Homo sapiens (human) ]

Gene ID: 127826493, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127826493
Gene description
H3K4me1 hESC enhancer GRCh37_chr13:72795269-72795769
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127826493 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (72221131..72221631)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (71442701..71443201)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (72795269..72795769)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene dachshund family transcription factor 1 Neighboring gene VISTA enhancer hs138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7811 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:72450848-72451348 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:72451349-72451849 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7812 Neighboring gene ribosomal protein L35a pseudogene 31 Neighboring gene ribosomal protein S10 pseudogene 21 Neighboring gene NANOG hESC enhancer GRCh37_chr13:72578868-72579392 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:72636687-72637228 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:72694600-72695463 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:72696928-72697478 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:72741998-72743197 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:72744178-72745377 Neighboring gene VISTA enhancer hs131 Neighboring gene VISTA enhancer hs141 Neighboring gene small nucleolar RNA SNORD37 Neighboring gene ribosomal protein L18a pseudogene 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_128000.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    72221131..72221631
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    71442701..71443201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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