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LOC127828083 H3K4me1 hESC enhancer GRCh37_chr14:77600131-77600630 [ Homo sapiens (human) ]

Gene ID: 127828083, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127828083
Gene description
H3K4me1 hESC enhancer GRCh37_chr14:77600131-77600630
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127828083 in Genome Data Viewer
Location:
chromosome: 14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (77133788..77134287)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (71343578..71344077)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (77600131..77600630)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77564243-77565072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8791 Neighboring gene CLOCK interacting pacemaker Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8793 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8792 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8795 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5967 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77605838-77606387 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:77606525-77607088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:77607089-77607652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:77607747-77608248 Neighboring gene zinc finger DHHC-type palmitoyltransferase 22 Neighboring gene Sharpr-MPRA regulatory region 385 Neighboring gene family with sequence similarity 204 member D, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8796 Neighboring gene transmembrane protein 63C Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77666368-77666882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8797

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_129582.1 

    Range
    101..600
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    77133788..77134287
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    71343578..71344077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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