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LOC127889407 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:55380387-55380889 [ Homo sapiens (human) ]

Gene ID: 127889407, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127889407
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:55380387-55380889
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127889407 in Genome Data Viewer
Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (57713155..57713657)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (57913520..57914030)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (55380387..55380889)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8B1 Neighboring gene tRNA-Gly (anticodon TCC) 5-1 Neighboring gene tRNA-Gly (anticodon TCC) 6-1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:55360919-55362118 Neighboring gene MPRA-validated peak3164 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:55366253-55366936 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:55386192-55386760 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:55386761-55387329 Neighboring gene uncharacterized LOC105372141 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:55404555-55405056 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:55405057-55405556 Neighboring gene RNA, U6 small nuclear 742, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_138939.1 

    Range
    101..603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    57713155..57713657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    57913520..57914030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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