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Cnn2 calponin 2 [ Mus musculus (house mouse) ]

Gene ID: 12798, updated on 27-Nov-2024

Summary

Official Symbol
Cnn2provided by MGI
Official Full Name
calponin 2provided by MGI
Primary source
MGI:MGI:105093
See related
Ensembl:ENSMUSG00000004665 AllianceGenome:MGI:105093
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Calpo2
Summary
Predicted to enable actin filament binding activity. Acts upstream of or within several processes, including negative regulation of macrophage migration; negative regulation of phagocytosis; and regulation of mononuclear cell proliferation. Predicted to be located in stress fiber. Predicted to be active in actin cytoskeleton. Is expressed in several structures, including 4-cell stage embryo; central nervous system; eye; forelimb; and lateral plate mesoderm. Orthologous to human CNN2 (calponin 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in lung adult (RPKM 223.3), spleen adult (RPKM 194.6) and 21 other tissues See more
Orthologs
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Genomic context

See Cnn2 in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (79824434..79831234)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (79988600..79995400)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, NMDA3B Neighboring gene transmembrane protein 259 Neighboring gene STARR-positive B cell enhancer ABC_E720 Neighboring gene STARR-positive B cell enhancer ABC_E6879 Neighboring gene STARR-positive B cell enhancer ABC_E2947 Neighboring gene predicted gene, 26243 Neighboring gene STARR-positive B cell enhancer ABC_E1805 Neighboring gene ATP-binding cassette, sub-family A member 7 Neighboring gene Rho GTPase activating protein 45 Neighboring gene STARR-positive B cell enhancer ABC_E2948

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (4)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 
enables actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in actin filament organization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to mechanical stimulus ISO
Inferred from Sequence Orthology
more info
PubMed 
acts_upstream_of establishment of localization in cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of macrophage migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of macrophage migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of phagocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of phagocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of actin filament-based process ISO
Inferred from Sequence Orthology
more info
PubMed 
acts_upstream_of_or_within regulation of leukocyte proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of mononuclear cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within wound healing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in stress fiber ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
calponin-2
Names
calponin H2, smooth muscle
h2-calponin
neutral calponin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007725.2NP_031751.1  calponin-2

    See identical proteins and their annotated locations for NP_031751.1

    Status: VALIDATED

    Source sequence(s)
    AK051845, BE656517, CB590846
    Consensus CDS
    CCDS24003.1
    UniProtKB/Swiss-Prot
    Q08093
    UniProtKB/TrEMBL
    D3Z7R6, Q543F3
    Related
    ENSMUSP00000004784.5, ENSMUST00000004784.11
    Conserved Domains (2) summary
    pfam00402
    Location:166190
    Calponin; Calponin family repeat
    cd21283
    Location:27135
    CH_CNN2; calponin homology (CH) domain found in calponin-2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    79824434..79831234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)