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mir-4961 mir-4961 stem loop [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798092, updated on 11-Sep-2024

Summary

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Official Symbol
mir-4961provided by FlyBase
Official Full Name
mir-4961 stem loopprovided by FlyBase
Primary source
FLYBASE:FBgn0263552
Locus tag
Dmel_CR43537
See related
miRBase:MI0017747; AllianceGenome:FB:FBgn0263552
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR43537; dme-mir-4961; Dmel\CR43537; miR-4961
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Genomic context

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See mir-4961 in Genome Data Viewer
Location:
2A1-2A1; 1-0.2 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1373623..1373755)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1267656..1267788)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene pan gu Neighboring gene uncharacterized protein Neighboring gene sister-of-Sex-lethal Neighboring gene AMP-activated protein kinase alpha subunit Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MicroRNAs That Contribute to Coordinating the Immune Response in Drosophila melanogaster. Atilano ML, et al. Genetics, 2017 Sep. PMID 28706002, Free PMC Article
  2. Global identification of functional microRNA-mRNA interactions in Drosophila. Wessels HH, et al. Nat Commun, 2019 Apr 9. PMID 30967537, Free PMC Article
  3. Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing. Mazloomian A, et al. RNA Biol, 2015. PMID 26512413, Free PMC Article
  4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • mir-4961-RA; Dmel\mir-4961-RA; CR43537-RA; Dmel\CR43537-RA
  • mir-4961-RB; Dmel\mir-4961-RB; CR43537-RB; Dmel\CR43537-RB
  • mir-4961-RM; Dmel\mir-4961-RM; CR43537-RM; Dmel\CR43537-RM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    1373623..1373755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_047725.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials